A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
This report has been generated by the myorg/myfirstpipeline analysis pipeline.
Report
generated on 2024-11-14, 11:56 UTC
based on data in:
/Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline/work/e9/09b70fcdd56a78053a0860dc76abcf
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Group | Software | Version |
|---|---|---|
| FASTQE | fastqe | 0.3.3 |
| SEQTK_TRIM | seqtk | 1.4-r122 |
| Workflow | Nextflow | 24.10.0 |
| myorg/myfirstpipeline | v1.0.0dev |
myorg/myfirstpipeline Workflow Summary
- this information is collected when the pipeline is started.URL: https://github.com/myorg/myfirstpipeline
Input/output options
- input
- https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv
- outdir
- results
Institutional config options
- config_profile_description
- Minimal test dataset to check pipeline function
- config_profile_name
- Test profile
Core Nextflow options
- configFiles
- N/A
- containerEngine
- docker
- launchDir
- /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline
- profile
- docker,test
- projectDir
- /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline
- runName
- hungry_khorana
- userName
- friederike.hanssen
- workDir
- /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline/work