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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

        Please remember to cite the tools that you use in your analysis.

        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.25.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the myorg/myfirstpipeline analysis pipeline.

        Report generated on 2024-11-14, 11:56 UTC based on data in: /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline/work/e9/09b70fcdd56a78053a0860dc76abcf

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        GroupSoftwareVersion
        FASTQEfastqe0.3.3
        SEQTK_TRIMseqtk1.4-r122
        WorkflowNextflow24.10.0
        myorg/myfirstpipelinev1.0.0dev

        myorg/myfirstpipeline Workflow Summary

        - this information is collected when the pipeline is started.URL: https://github.com/myorg/myfirstpipeline

        Input/output options

        input
        https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv
        outdir
        results

        Institutional config options

        config_profile_description
        Minimal test dataset to check pipeline function
        config_profile_name
        Test profile

        Core Nextflow options

        configFiles
        N/A
        containerEngine
        docker
        launchDir
        /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline
        profile
        docker,test
        projectDir
        /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline
        runName
        hungry_khorana
        userName
        friederike.hanssen
        workDir
        /Users/friederike.hanssen/Projects/training/hello-nextflow/hello-nf-core/solution/myorg-myfirstpipeline/work

        MultiQC v1.25.1 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.